Download


Standalone 3D-BLAST program new!
You download the package from:
Standalone_3d-blast_Linux_beta102.tar.gz
Standalone_3d-blast_Mac_beta102.tar.gz
Standalone_3d-blast_Mac_beta102_Lion.tar.gz

After downloading the package to you Linux-based computer, uncompress it by following commands in terminal.
  1. gunzip Standalone_3d-blast_Linux_beta102.tar.gz
  2. tar -xpf Standalone_3d-blast_Linux_beta102.tar
And then, you may check the file "README" in the directory "Standalone_3d-blast_Linux" for more information about compilation and usage of 3D-BLAST.
Our experience of distributing 3D-BLAST is limited. Should you encounter any problems with download, installation, or execution, please do not hesitate to contact us.


Structural Alphabet Sequence Database (SADB)
According to the k and a angles, each structure in the protein structure database has a specific (k, a)-map distribution and is able to be encoded into a corresponding 1D structural-alphabet sequence collected in the SADB database.
PDB: with Structural alphabet sequences Auto-update every 2 weeks
SCOP: with Structural alphabet sequences


Pair database (674 pairs)
For coding structural alphabets and calculating the SASM.


SCOP-894
The SCOP-894 consists of 894 query proteins from two subsets, SCOP95-1.67 and SCOP95-1.69. The SCOP95-1.67 has 378 query proteins, which are in the SCOP 1.67 but not in the SCOP 1.65 and the search database is the SCOP 1.65. The SCOP95-1.69 consists of 516 query proteins, which are in SCOP 1.69 and not in SCOP 1.67 and the search database is the SCOP 1.67.


SG-319
The dataset consists of 319 proteins, which are selected from PDB and contributed by over 10 structural genomics consortia.


108 query domains
A diverse data set of 108 query domains proposed by Aung and Tan, Bioinformatics (2004) 20:1045-1052.