Protein Structure Search

Input a protein structure as a query to discover its homologous proteins and evolutionary classifications.

Press the to obtain more information on that specific field.

NEWS: The standalone 3D-BLAST program is avaliable now. Please see Download page for more information.


Query

domain:

SCOP ID:   

protein:

PDB ID: Chain ID:  
@

New protein:

  Upload

Options:
@ Choose Database   
@ PDB (18-Oct-08)nr-PDB-90SCOP 1.75 (all)SCOP 1.75 (95%)SCOP 1.75 (40%)
@
@ E-value   
@ 10-1 10-5 10-10 10-15 10-20
@@
@ Maximum number of hit structures  
@ 10 20 50 100 200 other:

Reference:
@ 1. C.-H. Tung, J.-W. Huang and J.-M. Yang "Kappa-alpha plot derived structural alphabet and BLOSUM-like substitution matrix for fast protein structure database search," Genome Biology, vol. 8, pp. R31.1~R31.16, 2007.
@ 2. J.-M. Yang and C.-H. Tung "Protein structure database search and evolutionary classification," Nucleic Acids Research, vol. 34, pp. 3646-3659, 2006.

Related Work:
@ fastSCOP: A web server that rapidly identifies the structural domains and determines the evolutionary superfamilies of a query protein structure by using 3D-BLAST.

@ @
 

Last updated 2008/10/18 by J.-M. Yang, C.-H. Tung